Who is Recruiting from Scratch : Recruiting from Scratch is a talent firm that focuses on placing the best candidate for our clients. Our team is 100% remote and we work with teams across North America, South America, and Europe to help them hire. Bioinformatics Pipeline Engineer Location: South San Francisco, CA Company Stage: Series A Biotech Company Office Type: Onsite Salary Range: $155,000 - $200,000 + Equity Company Description Our client is a rapidly growing, venture-backed biotech company revolutionizing DNA sequencing services. Their innovative technology enables overnight sequencing of whole plasmids, bacterial genomes, and colonies without primers or minipreps. With a global network of labs and thousands of daily users including leading scientists and biotech innovators, they're accelerating scientific discoveries that contribute to a healthier planet. What You Will Do Design and develop robust bioinformatics pipelines focusing on Oxford Nanopore sequencing data Drive optimization of pipeline performance, reliability, and scalability using industry best practices Collaborate with cross-functional teams of scientists and engineers to implement specific pipeline goals Troubleshoot complex biological and sequencing artifacts while maintaining high coding standards Provide technical leadership in pipeline usage and support training initiatives Evaluate and integrate cutting-edge bioinformatics tools to enhance pipeline capabilities Ideal Candidate Background 3+ years of experience developing production-grade bioinformatics pipelines Advanced degree in Bioinformatics, Biostatistics, or related field Strong foundation in workflow languages, particularly Snakemake or Nextflow Hands-on experience with Oxford Nanopore and Illumina sequencing technologies Demonstrated expertise in Python, Bash, Conda, AWS, and GitHub Actions Track record of building and optimizing pipelines for commercial applications Preferred Qualifications Experience with Docker/Apptainer/Singularity containerization AWS cloud infrastructure knowledge (Lambda, S3, RDS) Background in developing REST APIs Experience in a fast-paced biotech environment Compensation & Benefits Competitive salary range: $155,000 - $200,000 Equity through Employee Stock Options Comprehensive health, dental, and vision coverage 401(k) with company matching 4 weeks PTO + 10 paid holidays Mental health benefits and gym membership Professional development opportunities Join a dynamic team that's pushing the boundaries of DNA sequencing technology. This role offers the opportunity to make a significant impact in a rapidly growing field while working with cutting-edge technologies. #J-18808-Ljbffr Recruiting From Scratch
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